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ASM188406v1

Organism name:
Bacillus proteolyticus (firmicutes)
Infraspecific name:
Strain: TD42
BioSample:
SAMN05231663
BioProject:
PRJNA325897
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884065.1 (latest)
RefSeq assembly accession:
GCF_001884065.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MACH01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893221 [UID] 3737598 [GenBank] 3741508 [RefSeq]

See Genome Information for Bacillus proteolyticus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Genome-Annotation-Data
##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/17/2016 16:21:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,932
CDS (total)::5,900
Genes (coding)::5,618
CDS (coding)::5,618
Genes (RNA)::32
rRNAs::3, 2, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (5S, 16S)
tRNAs::21
ncRNAs::5
Pseudo Genes (total)::282
Pseudo Genes (ambiguous residues)::0 of 282
Pseudo Genes (frameshifted)::91 of 282
Pseudo Genes (incomplete)::158 of 282
Pseudo Genes (internal stop)::61 of 282
Pseudo Genes (multiple problems)::25 of 282
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,859,329
Total ungapped length5,859,329
Number of contigs170
Contig N50131,211
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)170

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,859,3291705,859,329131,21100
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