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ASM188402v1

Organism name:
Bacillus pacificus (firmicutes)
Infraspecific name:
Strain: EB422
BioSample:
SAMN05231547
BioProject:
PRJNA325889
Submitter:
The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources
Date:
2016/11/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001884025.1 (latest)
RefSeq assembly accession:
GCF_001884025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MACD01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 893191 [UID] 3737548 [GenBank] 3740348 [RefSeq]

See Genome Information for Bacillus pacificus

There are 14 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Genome-Annotation-Data
##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/17/2016 16:20:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,582
CDS (total)::5,551
Genes (coding)::5,373
CDS (coding)::5,373
Genes (RNA)::31
rRNAs::2, 3, 3 (5S, 16S, 23S)
complete rRNAs::1 (23S)
partial rRNAs::2, 3, 2 (5S, 16S, 23S)
tRNAs::18
ncRNAs::5
Pseudo Genes (total)::178
Pseudo Genes (ambiguous residues)::0 of 178
Pseudo Genes (frameshifted)::54 of 178
Pseudo Genes (incomplete)::108 of 178
Pseudo Genes (internal stop)::39 of 178
Pseudo Genes (multiple problems)::20 of 178
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,416,792
Total ungapped length5,416,792
Number of contigs102
Contig N50148,228
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)102

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,416,7921025,416,792148,22800
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