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ASM186666v1

Organism name:
Streptomyces monashensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MUSC 1
BioSample:
SAMN05915827
BioProject:
PRJNA343838
Submitter:
Monash University Malaysia
Date:
2016/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001866665.1 (latest)
RefSeq assembly accession:
GCF_001866665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MLYO01
Assembly method:
CLC NGS Cell v. June-2016
Expected final version:
yes
Genome coverage:
170.0x
Sequencing technology:
Illumina MiSeq

IDs: 875381 [UID] 3689908 [GenBank] 3690768 [RefSeq]

See Genome Information for Streptomyces monashensis

History (Show revision history)

Comment

Bacteria and source DNA available from Learn-Han Lee.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/19/2016 14:55:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,077
CDS (total)::9,001
Genes (coding)::8,550
CDS (coding)::8,550
Genes (RNA)::76
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::451
Pseudo Genes (ambiguous residues)::0 of 451
Pseudo Genes (frameshifted)::121 of 451
Pseudo Genes (incomplete)::358 of 451
Pseudo Genes (internal stop)::29 of 451
Pseudo Genes (multiple problems)::52 of 451
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,254,857
Total ungapped length10,254,857
Number of contigs218
Contig N50159,229
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)218

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,254,85721810,254,857159,22900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces monashensisStreptomyces monashensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009796285.1Streptomyces broussonetiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.1559.4962.67

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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