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ASM186531v1

Organism name:
Streptomyces sampsonii (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: KJ40
BioSample:
SAMN04338613
BioProject:
PRJNA305966
Submitter:
Sichuan Agricultural University
Date:
2016/11/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001865315.1 (latest)
RefSeq assembly accession:
GCF_001865315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LORI01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
443.0x
Sequencing technology:
Illumina HiSeq

IDs: 874611 [UID] 3682458 [GenBank] 3689278 [RefSeq]

See Genome Information for Streptomyces sampsonii

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length7,261,502
Total ungapped length7,235,398
Gaps between scaffolds0
Number of scaffolds9
Scaffold N507,182,059
Scaffold L501
Number of contigs578
Contig N5019,320
Contig L50119
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)578

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,261,50297,235,3987,182,0595690

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sampsoniiStreptomyces sampsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000719955.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9790.8092.80

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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