U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM175078v1

Organism name:
Streptomyces rubrolavendulae (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MJM4426
BioSample:
SAMN04595356
BioProject:
PRJNA317020
Submitter:
National Academy of Agricultural Science, Rural Development Adminstration
Date:
2016/10/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001750785.1 (latest)
RefSeq assembly accession:
GCF_001750785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Genome coverage:
92x
Sequencing technology:
PacBio

IDs: 804691 [UID] 3480018 [GenBank] 3481078 [RefSeq]

See Genome Information for Streptomyces rubrolavendulae

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/06/2023 03:39:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,537
CDSs (total)::5,451
Genes (coding)::5,313
CDSs (with protein)::5,313
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::138
CDSs (without protein)::138
Pseudo Genes (ambiguous residues)::0 of 138
Pseudo Genes (frameshifted)::28 of 138
Pseudo Genes (incomplete)::121 of 138
Pseudo Genes (internal stop)::5 of 138
Pseudo Genes (multiple problems)::15 of 138
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,543,262
Total ungapped length6,543,262
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001750795.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP017316.1=NZ_CP017316.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,543,262

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rubrolavendulaeStreptomyces rubrolavendulae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154445.1Streptomyces fradiaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.1985.4791.91

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
Support Center