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ASM174816v1

Organism name:
Streptomyces sp. SPMA113 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SPMA113
BioSample:
SAMD00052840
BioProject:
PRJDB4859
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001748165.1 (latest)
RefSeq assembly accession:
GCF_001748165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BDFA01
Assembly method:
newbler v. 2.8
Genome coverage:
85x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 803291 [UID] 3473578 [GenBank] 3476548 [RefSeq]

See Genome Information for Streptomyces sp. SPMA113

History (Show revision history)

Comment



Strain NBRC 110612 available from the NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for ... understanding the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length11,596,102
Total ungapped length11,592,136
Gaps between scaffolds0
Number of scaffolds70
Scaffold N50428,761
Scaffold L5010
Number of contigs86
Contig N50291,593
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced11,596,1027011,592,136428,761160

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. SPMA113Streptomyces sp. SPMA113

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_015689475.1Streptomyces solisilvaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7894.4394.05

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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