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ASM174808v1

Organism name:
Streptomyces sp. TP-A0874 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: TP-A0874
BioSample:
SAMD00035866
BioProject:
PRJDB4099
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/08/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001748085.1 (latest)
RefSeq assembly accession:
GCF_001748085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBZK01
Assembly method:
Newbler v. 2.8
Genome coverage:
170x
Sequencing technology:
454 GS-FLX Titanium; Illumina MiSeq

IDs: 803251 [UID] 3473498 [GenBank] 3475648 [RefSeq]

See Genome Information for Streptomyces sp. TP-A0874

History (Show revision history)

Comment



Strain NBRC 110466 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length5,097,807
Total ungapped length5,096,204
Gaps between scaffolds0
Number of scaffolds18
Scaffold N50489,425
Scaffold L504
Number of contigs21
Contig N50489,425
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,097,807185,096,204489,42530

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. TP-A0874Streptomyces sp. TP-A0874

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009735685.1Streptomyces lyciitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.1824.3816.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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