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ASM174648v1

Organism name:
Streptomyces agglomeratus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 5-1-8
BioSample:
SAMN05631093
BioProject:
PRJNA340066
Submitter:
Chinese Academy of Sciences
Date:
2016/09/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_001746485.1 (latest)
RefSeq assembly accession:
GCF_001746485.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MEHL01
Assembly method:
SOAPdenovo v. 2.3
Expected final version:
no
Genome coverage:
180.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 802121 [UID] 3470268 [GenBank] 3522328 [RefSeq]

See Genome Information for Streptomyces agglomeratus

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/02/2016 11:18:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,284
CDS (total)::6,192
Genes (coding)::5,969
CDS (coding)::5,969
Genes (RNA)::92
rRNAs::7, 8, 9 (5S, 16S, 23S)
complete rRNAs::7, 8, 8 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::223
Pseudo Genes (ambiguous residues)::0 of 223
Pseudo Genes (frameshifted)::93 of 223
Pseudo Genes (incomplete)::139 of 223
Pseudo Genes (internal stop)::18 of 223
Pseudo Genes (multiple problems)::27 of 223
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,087,990
Total ungapped length7,087,990
Number of contigs3
Contig N507,047,685
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,087,99037,087,9907,047,68500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces agglomeratusStreptomyces agglomeratus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005981935.1Streptomyces chryseustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.9365.1765.27

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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