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ASM169551v1

Organism name:
Escherichia coli O157:H7 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: FRIK944
BioSample:
SAMN04510563
BioProject:
PRJNA322195
Submitter:
University of Florida
Date:
2016/07/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001695515.1 (latest)
RefSeq assembly accession:
GCF_001695515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Genome coverage:
25x
Sequencing technology:
PacBio

IDs: 775531 [UID] 3362808 [GenBank] 3365538 [RefSeq]

See Genome Information for Escherichia coli

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/24/2023 04:37:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,972
CDSs (total)::5,841
Genes (coding)::5,489
CDSs (with protein)::5,489
Genes (RNA)::131
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::101
ncRNAs::8
Pseudo Genes (total)::352
CDSs (without protein)::352
Pseudo Genes (ambiguous residues)::0 of 352
Pseudo Genes (frameshifted)::142 of 352
Pseudo Genes (incomplete)::189 of 352
Pseudo Genes (internal stop)::81 of 352
Pseudo Genes (multiple problems)::54 of 352
Pseudo Genes (short protein)::4 of 352
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,866,200
Total ungapped length5,866,200
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001695525.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP016625.1=NZ_CP016625.1
Plasmid p0157CP016626.1=NZ_CP016626.1

Assembly statistics

MoleculeTotal
Length
All5,866,200
Chromosome 5,770,602
Plasmid p015795,598

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O157:H7Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281725.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281725.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9387.8497.23
Best-match type99.9387.8497.23

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna