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ASM168732v1

Organism name:
Streptomyces sp. PTY087I2 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: PTY087I2
BioSample:
SAMN04571751
BioProject:
PRJNA315873
Submitter:
University of Connecticut
Date:
2016/07/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001687325.1 (latest)
RefSeq assembly accession:
GCF_001687325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LZRD01
Assembly method:
A5-MiSeq v. 20140113
Expected final version:
yes
Genome coverage:
90.0x
Sequencing technology:
Illumina MiSeq

IDs: 770601 [UID] 3346158 [GenBank] 3350028 [RefSeq]

See Genome Information for Streptomyces sp. PTY087I2

History (Show revision history)

Comment

Annotated using prokka 1.10 from http://www.vicbioinformatics.com

Global statistics

Total sequence length8,164,109
Total ungapped length8,163,922
Gaps between scaffolds0
Number of scaffolds83
Scaffold N50252,304
Scaffold L5013
Number of contigs86
Contig N50189,289
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,164,109838,163,922252,30430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. PTY087I2Streptomyces sp. PTY087I2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154385.1Streptomyces albovinaceustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.5167.6476.32

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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