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ManJav1.0

Organism name:
Manis javanica (Malayan pangolin)
Isolate:
MP_PG03-UM
Sex:
female
BioSample:
SAMN02935387
BioProject:
PRJNA256023
Submitter:
The International Pangolin Research Consortium
Date:
2016/07/14
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_001685135.1 (latest)
RefSeq assembly accession:
GCF_001685135.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JSZB01
Assembly method:
SGA v. 0.10.10
Expected final version:
no
Genome coverage:
60.0x
Sequencing technology:
Illumina HiSeq

IDs: 769121 [UID] 3342958 [GenBank] 3364648 [RefSeq]

See Genome Information for Manis javanica

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,547,379,330
Total ungapped length2,349,360,106
Gaps between scaffolds0
Number of scaffolds80,669
Scaffold N50204,728
Scaffold L503,399
Number of contigs398,997
Contig N5038,922
Contig L5016,964
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)80,669

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,547,379,33080,6692,349,360,106204,728318,3280