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ASM165351v1

Organism name:
Streptomyces sp. ERV7 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ERV7
BioSample:
SAMN05163630
BioProject:
PRJNA322581
Submitter:
Centre for Microbial Ecology and Genoics, University of Pretoria,
Date:
2016/05/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001653515.1 (latest)
RefSeq assembly accession:
GCF_001653515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LYOY01
Assembly method:
SoapDenovo v. May-2016; Velvet v. May-2016; Newbler v. May-2016; CISA v. May-2016
Expected final version:
no
Genome coverage:
62.0x
Sequencing technology:
Illumina MiSeq

IDs: 751021 [UID] 3281558 [GenBank] 3397738 [RefSeq]

See Genome Information for Streptomyces sp. ERV7

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/24/2016 17:17:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,346
CDS (total)::6,278
Genes (coding)::5,913
CDS (coding)::5,913
Genes (RNA)::68
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::2, 2, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::365
Pseudo Genes (ambiguous residues)::0 of 365
Pseudo Genes (frameshifted)::75 of 365
Pseudo Genes (incomplete)::298 of 365
Pseudo Genes (internal stop)::4 of 365
Pseudo Genes (multiple problems)::12 of 365
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,105,287
Total ungapped length7,105,287
Number of contigs116
Contig N501,467,234
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,105,2871167,105,2871,467,23400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ERV7Streptomyces sp. ERV7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649795.1Streptomyces melanogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.5478.9058.52

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna