U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM165021v1

Organism name:
Streptomyces sp. RTd22 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RTd22
BioSample:
SAMN04901306
BioProject:
PRJNA320307
Submitter:
Faculdade de Ciencias Farmaceuticas de Ribeirao Preto - University of Sao Paulo
Date:
2016/05/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001650215.1 (latest)
RefSeq assembly accession:
GCF_001650215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.2.0
Genome coverage:
243x
Sequencing technology:
PacBio

IDs: 748941 [UID] 3269728 [GenBank] 3275398 [RefSeq]

See Genome Information for Streptomyces sp. RTd22

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from Laboratory of Microbial Chemistry, Faculdade de Ciencias Farmaceuticas de Ribeirao Preto, University of Sao Paulo, Avenida do Cafe, s/n, 14040-903, Ribeirao Preto, SP, Brazil
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information ... about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/16/2024 06:46:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::9,705
CDSs (total)::9,604
Genes (coding)::9,074
CDSs (with protein)::9,074
Genes (RNA)::101
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::14
Pseudo Genes (total)::530
CDSs (without protein)::530
Pseudo Genes (ambiguous residues)::0 of 530
Pseudo Genes (frameshifted)::338 of 530
Pseudo Genes (incomplete)::255 of 530
Pseudo Genes (internal stop)::12 of 530
Pseudo Genes (multiple problems)::73 of 530
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length11,142,275
Total ungapped length11,142,275
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001650225.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015726.1=NZ_CP015726.1

Assembly statistics

MoleculeTotal
Length
Chromosome 11,142,275

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. RTd22Streptomyces sp. RTd22

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000158915.1Streptomyces himastatinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0383.5788.96

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna