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ASM165021v1

Organism name:
Streptomyces sp. RTd22 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RTd22
BioSample:
SAMN04901306
BioProject:
PRJNA320307
Submitter:
Faculdade de Ciencias Farmaceuticas de Ribeirao Preto - University of Sao Paulo
Date:
2016/05/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001650215.1 (latest)
RefSeq assembly accession:
GCF_001650215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.2.0
Genome coverage:
243x
Sequencing technology:
PacBio

IDs: 748941 [UID] 3269728 [GenBank] 3275398 [RefSeq]

See Genome Information for Streptomyces sp. RTd22

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from Laboratory of Microbial Chemistry, Faculdade de Ciencias Farmaceuticas de Ribeirao Preto, University of Sao Paulo, Avenida do Cafe, s/n, 14040-903, Ribeirao Preto, SP, Brazil

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/13/2022 09:18:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,678
CDSs (total)::9,577
Genes (coding)::8,963
CDSs (with protein)::8,963
Genes (RNA)::101
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::14
Pseudo Genes (total)::614
CDSs (without protein)::614
Pseudo Genes (ambiguous residues)::0 of 614
Pseudo Genes (frameshifted)::379 of 614
Pseudo Genes (incomplete)::310 of 614
Pseudo Genes (internal stop)::18 of 614
Pseudo Genes (multiple problems)::89 of 614
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length11,142,275
Total ungapped length11,142,275
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001650225.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP015726.1=NZ_CP015726.1

Assembly statistics

MoleculeTotal
Length
Chromosome 11,142,275

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. RTd22Streptomyces sp. RTd22

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000158915.1Streptomyces himastatinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0383.5788.96

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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