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ASM164666v1

Organism name:
Streptomyces albulus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: B-3066
BioSample:
SAMN04621598
BioProject:
PRJNA317587
Submitter:
University of Illinois at Urbana-Champaign
Date:
2016/05/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001646665.1 (latest)
RefSeq assembly accession:
GCF_001646665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWBU01
Assembly method:
CLC NGS Cell v. 8
Expected final version:
yes
Genome coverage:
76.0x
Sequencing technology:
Illumina MiSeq

IDs: 741751 [UID] 3245728 [GenBank] 3246578 [RefSeq]

See Genome Information for Streptomyces albulus

There are 10 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/13/2016 13:13:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,813
CDS (total)::6,741
Genes (coding)::6,394
CDS (coding)::6,394
Genes (RNA)::72
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::347
Pseudo Genes (ambiguous residues)::17 of 347
Pseudo Genes (frameshifted)::49 of 347
Pseudo Genes (incomplete)::293 of 347
Pseudo Genes (internal stop)::9 of 347
Pseudo Genes (multiple problems)::18 of 347
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,642,040
Total ungapped length7,634,786
Gaps between scaffolds0
Number of scaffolds413
Scaffold N50225,771
Scaffold L5013
Number of contigs490
Contig N50168,906
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)413

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,642,0404137,634,786225,771770

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albulusStreptomyces albulus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014650635.1Streptomyces albulussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649735.1Streptomyces lavendofoliaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.2318.8414.01
Best-match type91.2470.9575.55

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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