U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM164056v1

Organism name:
Streptomyces sp. RTd22 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RTd22
BioSample:
SAMN04901306
BioProject:
PRJNA319588
Submitter:
Faculdade de Ciencias Farmaceuticas de Ribeirao Preto - University of Sao Paulo
Date:
2016/05/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001640565.1 (latest)
RefSeq assembly accession:
GCF_001640565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LXIC01
Assembly method:
Lasergene SeqMan NGen assembler v. 3.1
Expected final version:
yes
Genome coverage:
70.0x
Sequencing technology:
Illumina MiSeq

IDs: 736301 [UID] 3223548 [GenBank] 3234308 [RefSeq]

See Genome Information for Streptomyces sp. RTd22

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length11,185,248
Total ungapped length11,180,448
Gaps between scaffolds0
Number of scaffolds97
Scaffold N50416,025
Scaffold L509
Number of contigs193
Contig N50179,613
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)97

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced11,185,2489711,180,448416,025960

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. RTd22Streptomyces sp. RTd22

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000158915.1Streptomyces himastatinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0483.2388.91

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
Support Center