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ASM163694v1

This assembly has been replaced. See current version

Organism name:: Streptomyces sp. FXJ1.172 (high G+C Gram-positive bacteria)
Infraspecific name:: Strain: FXJ1.172
BioSample:: SAMN04892703
BioProject:: PRJNA319451
Submitter:: Institute of Microbiology, Chinese Academy of Sciences
Date:: 2016/05/04
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_001636945.1 (replaced)
RefSeq assembly accession:: GCF_001636945.1 (replaced)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: LWRP01
Assembly method:: Newbler v. 2.7
Expected final version:: yes
Genome coverage:: 20.0x
Sequencing technology:: 454

IDs: 734041 [UID] 3218388 [GenBank] 3397018 [RefSeq]

See Genome Information for Streptomyces sp. FXJ1.172

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001636945.2	=	GCF_001636945.2	ASM163694v2	Complete Genome	Latest GenBank, Latest RefSeq
GCA_001636945.1	=	GCF_001636945.1	ASM163694v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This WGS project has been superceded by the complete genome in (non-WGS) GenBank records CP119133, CP119134, CP119135

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/25/2016 08:45:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,144
CDS (total)::8,066
Genes (coding)::7,600
CDS (coding)::7,600
Genes (RNA)::78
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::71
ncRNAs::3
Pseudo Genes (total)::466
Pseudo Genes (ambiguous residues)::0 of 466
Pseudo Genes (frameshifted)::119 of 466
Pseudo Genes (incomplete)::374 of 466
Pseudo Genes (internal stop)::27 of 466
Pseudo Genes (multiple problems)::49 of 466
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	9,185,177
Total ungapped length	9,185,177
Number of contigs	215
Contig N50	133,287
Contig L50	26
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	215

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	92.37	70.86	66.85

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ASM163694v1

See Genome Information for Streptomyces sp. FXJ1.172

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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