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ASM160598v2

Organism name:
Dendrobium catenatum (monocots)
Infraspecific name:
Specimen-voucher: NOCC:Z.J. Liu 4979
Sex:
hermaphrodite
BioSample:
SAMN03083363
BioProject:
PRJNA262478
Submitter:
The National Orchid Conservation Center of China, and The Orchid Conservation and Research Center of Shenzhen
Date:
2017/12/12
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001605985.2 (latest)
RefSeq assembly accession:
GCF_001605985.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
JSDN02
Assembly method:
platanus v. 1.2.1
Expected final version:
yes
Genome coverage:
202.0x
Sequencing technology:
Illumina HiSeq

IDs: 1493531 [UID] 5799388 [GenBank] 9270238 [RefSeq]

See Genome Information for Dendrobium catenatum

History (Show revision history)

Comment

Global statistics

Total sequence length1,104,259,548
Total ungapped length1,060,917,959
Gaps between scaffolds0
Number of scaffolds286,090
Scaffold N501,043,725
Scaffold L50214
Number of contigs311,841
Contig N5051,763
Contig L505,655
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)311,841

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,104,107,363286,0891,060,765,7741,043,72525,7510
MoleculeTotal
Length
Chloroplast Pltd152,185