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ASM159360v1

Organism name:
Algoriphagus sanaruensis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: M8-2
Isolate:
Brackish lake
BioSample:
SAMN04111281
BioProject:
PRJNA296932
Submitter:
Shizuoka University
Date:
2016/03/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001593605.1 (latest)
RefSeq assembly accession:
GCF_001593605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.8
Genome coverage:
126x
Sequencing technology:
Miseq

IDs: 707151 [UID] 3112448 [GenBank] 3399908 [RefSeq]

See Genome Information for Algoriphagus sanaruensis

History (Show revision history)

Comment

Bacteria available from Shizuoka University, Japan (3-5-1 Johoku, Naka-ku, Hamamatsu, Shizuoka, 432-8561 JAPAN)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Annotation modified by submitter

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 09:44:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,353
CDSs (total)::3,302
Genes (coding)::3,298
CDSs (with protein)::3,298
Genes (RNA)::51
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::40
ncRNAs::2
Pseudo Genes (total)::4
CDSs (without protein)::4
Pseudo Genes (ambiguous residues)::0 of 4
Pseudo Genes (frameshifted)::0 of 4
Pseudo Genes (incomplete)::4 of 4
Pseudo Genes (internal stop)::0 of 4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,882,610
Total ungapped length3,882,610
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001593615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012836.1=NZ_CP012836.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,882,610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Algoriphagus sanaruensisAlgoriphagus sanaruensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003253485.1Algoriphagus aquaeductustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.0818.4814.65

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected