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ASM159086v1

Organism name:
Streptomyces sp. NBRC 110611 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NBRC 110611
BioSample:
SAMD00026621
BioProject:
PRJDB3538
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/02/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001590865.1 (latest)
RefSeq assembly accession:
GCF_001590865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBUY01
Assembly method:
newbler v. 2.8
Genome coverage:
102x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 705561 [UID] 3050328 [GenBank] 3396238 [RefSeq]

See Genome Information for Streptomyces sp. NBRC 110611

History (Show revision history)

Comment



The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)
Strain ... NBRC 110611 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).  more

Global statistics

Total sequence length7,904,619
Total ungapped length7,870,697
Gaps between scaffolds0
Number of scaffolds99
Scaffold N50355,562
Scaffold L506
Number of contigs200
Contig N50115,475
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)99

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,904,619997,870,697355,5621010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NBRC 110611Streptomyces sp. NBRC 110611

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003389455.1Streptomyces inhibenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.5349.2440.89

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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