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ASM157738v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SM254
BioSample:
SAMN04053756
BioProject:
PRJNA295319
Submitter:
University of Minnesota
Date:
2016/02/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001577385.1 (latest)
RefSeq assembly accession:
GCF_001577385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
250x
Sequencing technology:
PacBio RS II

IDs: 650441 [UID] 2908018 [GenBank] 2929598 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 63 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The organism was changed from "Streptomyces albus" to "Streptomyces albidoflavus" in October 2018.
Source material is available from the laboratory of ... Christine E. Salomon, University of Minnesota  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/05/2023 22:31:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,285
CDSs (total)::6,193
Genes (coding)::6,083
CDSs (with protein)::6,083
Genes (RNA)::92
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::110
CDSs (without protein)::110
Pseudo Genes (ambiguous residues)::0 of 110
Pseudo Genes (frameshifted)::52 of 110
Pseudo Genes (incomplete)::66 of 110
Pseudo Genes (internal stop)::12 of 110
Pseudo Genes (multiple problems)::18 of 110
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_001577385.1
Current Name::Streptomyces albidoflavus
Previous Name::Streptomyces albus
Date Updated::2018-10-26
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_000719955.1
A1 Name::Streptomyces albidoflavus
A1 ANI::99.12885%
A1 Query Coverage::93.34%
A1 Subject Coverage::94.47%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_000813365.1
A2 Name::Streptomyces albus
A2 ANI::83.37498%
A2 Query Coverage::14.17%
A2 Subject Coverage::13.4%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length7,170,504
Total ungapped length7,170,504
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001577395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014485.1=NZ_CP014485.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,170,504

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000719955.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000719955.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1393.3494.47
Best-match type99.1393.3494.47

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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