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ASM157211v1

Organism name:
Streptomyces scabiei (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 84-232
BioSample:
SAMN04432926
BioProject:
PRJNA309426
Submitter:
University of Florida
Date:
2016/02/24
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001572115.1 (latest)
RefSeq assembly accession:
GCF_001572115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LRSS01
Assembly method:
SPAdes v. 3.5.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 647831 [UID] 2894728 [GenBank] 2906718 [RefSeq]

See Genome Information for Streptomyces scabiei

There are 61 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length9,832,255
Total ungapped length9,832,255
Number of contigs1,464
Contig N5012,557
Contig L50208
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,464

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,832,2551,4649,832,25512,55700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces scabieiStreptomyces scabiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_033795025.1Streptomyces scabieitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_033795025.1Streptomyces scabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5493.0691.39
Best-match type99.5493.0691.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna