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ASM157064v1

Organism name:
Streptomyces hygroscopicus subsp. hygroscopicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 100766
BioSample:
SAMD00040622
BioProject:
PRJDB3204
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/02/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_001570645.1 (latest)
RefSeq assembly accession:
GCF_001570645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCAN01
Assembly method:
newbler v. 2.6
Genome coverage:
103x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 647041 [UID] 2892698 [GenBank] 3136848 [RefSeq]

See Genome Information for Streptomyces hygroscopicus

There are 13 assemblies for this organism

See more

History (Show revision history)

Comment



Strain NBRC 100766 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

Members of the genus Streptomyces are attractive target for genome sequencing due to their industrial importance and secondary metabolic potential. This project aims to support taxonomical studies and genome-mining of Streptomyces ... spp. by providing genome sequence data through the NBRC web site and DDBJ/EMBL/GenBank databases.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length10,165,415
Total ungapped length10,145,502
Gaps between scaffolds0
Number of scaffolds217
Scaffold N5097,148
Scaffold L5033
Number of contigs268
Contig N5079,941
Contig L5042
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)217

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,165,41521710,145,50297,148510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces hygroscopicus subsp. hygroscopicusStreptomyces hygroscopicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001553455.1Streptomyces hygroscopicus subsp. hygroscopicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001553455.1Streptomyces hygroscopicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7684.5290.60
Best-match type97.7684.5290.60

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna
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