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Source database (GenBank or RefSeq) File type

ASM155963v1

Organism name:: Escherichia coli B (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: C3029
BioSample:: SAMN04435508
BioProject:: PRJNA309540
Submitter:: New England Biolabs
Date:: 2016/02/11
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_001559635.1 (latest)
RefSeq assembly accession:: GCF_001559635.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: HGAP.3/Quiver v. 2.3.0
Genome coverage:: 240x
Sequencing technology:: PacBio

IDs: 640841 [UID] 2875088 [GenBank] 2877178 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265635 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001559635.1	=	GCF_001559635.1	ASM155963v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA/bacteria is available from New England Biolabs

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/03/2024 08:49:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,514
CDSs (total)::4,397
Genes (coding)::4,164
CDSs (with protein)::4,164
Genes (RNA)::117
rRNAs::10, 7, 7 (5S, 16S, 23S)
complete rRNAs::10, 7, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::8
Pseudo Genes (total)::233
CDSs (without protein)::233
Pseudo Genes (ambiguous residues)::0 of 233
Pseudo Genes (frameshifted)::58 of 233
Pseudo Genes (incomplete)::176 of 233
Pseudo Genes (internal stop)::33 of 233
Pseudo Genes (multiple problems)::35 of 233
Pseudo Genes (short protein)::4 of 233
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,569,185
Total ungapped length	4,569,185
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.15	93.19	79.95
Best-match type	99.15	93.19	79.95

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ASM155963v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265635 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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