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ASM155873v1

Organism name:
Pantoea agglomerans (g-proteobacteria)
Infraspecific name:
Strain: FDAARGOS_160
BioSample:
SAMN03996307
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2016/02/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001558735.1 (replaced)
RefSeq assembly accession:
GCF_001558735.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP3 v. Oct 2014
Genome coverage:
406.902x
Sequencing technology:
PacBio; Illumina

IDs: 640581 [UID] 2874248 [GenBank] 2877238 [RefSeq]

See Genome Information for Pantoea agglomerans

There are 70 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 01/21/2016 08:58:51
Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method :: Best-placed reference ... protein set; GeneMarkS+
Annotation Software revision :: 3.1
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total) :: 4,500
CDS (total) :: 4,393
Genes (coding) :: 4,241
CDS (coding) :: 4,241
Genes (RNA) :: 107
rRNAs :: 8, 7, 7 (5S, 16S, 23S)
complete rRNAs :: 8, 7, 7 (5S, 16S, 23S)
partial rRNAs :: 
tRNAs :: 76
ncRNAs :: 9
Pseudo Genes (total) :: 152
Pseudo Genes (ambiguous residues) :: 0 of 152
Pseudo Genes (frameshifted) :: 94 of 152
Pseudo Genes (incomplete) :: 33 of 152
Pseudo Genes (internal stop) :: 58 of 152
Pseudo Genes (multiple problems) :: 30 of 152
##Genome-Annotation-Data-END##  more

Global statistics

Total sequence length4,808,813
Total ungapped length4,808,813
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001558745.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP014129.1=NZ_CP014129.1
Plasmid unnamed1CP014126.1=NZ_CP014126.1
Plasmid unnamed2CP014127.1=NZ_CP014127.1
Plasmid unnamed3CP014128.1=NZ_CP014128.1

Assembly statistics

MoleculeTotal
Length
All4,808,813
Chromosome 4,050,093
Plasmid unnamed190,507
Plasmid unnamed2470,301
Plasmid unnamed3197,912
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