U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM155347v1

Organism name:
Streptomyces hygroscopicus subsp. hygroscopicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 12859
BioSample:
SAMD00022818
BioProject:
PRJDB3203
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/02/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_001553475.1 (latest)
RefSeq assembly accession:
GCF_001553475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBOY01
Assembly method:
Newbler v. 2.6
Genome coverage:
67x
Sequencing technology:
Illumina MiSeq; Roche 454

IDs: 638141 [UID] 2868158 [GenBank] 3397258 [RefSeq]

See Genome Information for Streptomyces hygroscopicus

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment



Strain NBRC 12859 available from NBRC culture collection (http://www.nbrc.nite.go.jp/e/).
The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html)  more

Global statistics

Total sequence length9,781,661
Total ungapped length9,781,661
Number of contigs539
Contig N5040,212
Contig L5072
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)539

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,781,6615399,781,66140,21200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces hygroscopicus subsp. hygroscopicusStreptomyces hygroscopicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001553455.1Streptomyces hygroscopicus subsp. hygroscopicustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001553455.1Streptomyces hygroscopicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0392.3095.39
Best-match type99.0392.3095.39

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna
Support Center