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ASM155345v1

Organism name:
Streptomyces hygroscopicus subsp. hygroscopicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 13472
BioSample:
SAMD00022817
BioProject:
PRJDB3201
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2016/02/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001553455.1 (latest)
RefSeq assembly accession:
GCF_001553455.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBOX01
Assembly method:
Newbler v. 2.6
Genome coverage:
34x
Sequencing technology:
Illumina MiSeq; Roche 454

IDs: 638131 [UID] 2868138 [GenBank] 2870988 [RefSeq]

See Genome Information for Streptomyces hygroscopicus

There are 13 assemblies for this organism

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History (Show revision history)

Comment



The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes.
(http://www.bio.nite.go.jp/ngac/e/project_wgs-e.html) Strain ... NBRC 13472 available from NBRC culture collection (http://www.nbrc.nite.go.jp/e/).  more

Global statistics

Total sequence length9,464,604
Total ungapped length9,464,604
Number of contigs680
Contig N5028,354
Contig L5099
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)680

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,464,6046809,464,60428,35400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces hygroscopicus subsp. hygroscopicusStreptomyces hygroscopicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001553475.1Streptomyces hygroscopicus subsp. hygroscopicussyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001553475.1Streptomyces hygroscopicussyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0495.4492.34
Best-match type99.0495.4492.34

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna
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