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ASM154290v1

Organism name:
Halorubrum aethiopicum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: SAH-A6
BioSample:
SAMN04278861
BioProject:
PRJNA302707
Submitter:
Silla university
Date:
2016/01/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001542905.1 (latest)
RefSeq assembly accession:
GCF_001542905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LOAJ01
Assembly method:
CLC NGS Cell v. 1.50; PacBio SMRT Analysis v. 2.3.0
Expected final version:
no
Genome coverage:
294.93x
Sequencing technology:
Illumina

IDs: 632951 [UID] 2853108 [GenBank] 3392598 [RefSeq]

See Genome Information for Halorubrum aethiopicum

History (Show revision history)

Comment

Global statistics

Total sequence length3,325,770
Total ungapped length3,325,770
Number of contigs3
Contig N503,045,622
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,325,77033,325,7703,045,62200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halorubrum aethiopicumHalorubrum aethiopicum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002252985.1Halorubrum haloduranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.6369.1969.33

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected