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ASM151428v1

Organism name:
Streptomyces sp. DSM 15324 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 15324
BioSample:
SAMN04193352
BioProject:
PRJNA299231
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001514285.1 (latest)
RefSeq assembly accession:
GCF_001514285.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMXA01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
130.8x
Sequencing technology:
Illumina MiSeq

IDs: 618691 [UID] 2788618 [GenBank] 3398308 [RefSeq]

See Genome Information for Streptomyces sp. DSM 15324

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 16:55:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,039
CDS::7,596
Pseudo Genes::365
rRNAs::2, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::71
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,379,038
Total ungapped length9,350,829
Gaps between scaffolds0
Number of scaffolds52
Scaffold N50556,575
Scaffold L506
Number of contigs101
Contig N50339,891
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)101

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,379,038529,350,829556,575490

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. DSM 15324Streptomyces sp. DSM 15324

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001418585.1Streptomyces griseorubertype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.5767.4363.91

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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