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ASM151426v1

Organism name:
Streptomyces resistomycificus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 40133
BioSample:
SAMN04193356
BioProject:
PRJNA299235
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001514265.1 (latest)
RefSeq assembly accession:
GCF_001514265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMWZ01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
49.5x
Sequencing technology:
Illumina MiSeq

IDs: 618681 [UID] 2788588 [GenBank] 2791598 [RefSeq]

See Genome Information for Streptomyces resistomycificus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 16:59:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,052
CDS::7,782
Pseudo Genes::195
rRNAs::1, 1, 3 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::69
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,179,735
Total ungapped length9,167,121
Gaps between scaffolds0
Number of scaffolds35
Scaffold N50697,917
Scaffold L505
Number of contigs61
Contig N50264,564
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,179,735359,167,121697,917260

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces resistomycificusStreptomyces resistomycificus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001270505.1Streptomyces resistomycificustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001270505.1Streptomyces resistomycificustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8799.70
Best-match type99.9999.8799.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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