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ASM151412v1

Organism name:
Streptomyces longwoodensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 41677
BioSample:
SAMN04193348
BioProject:
PRJNA299227
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001514125.1 (latest)
RefSeq assembly accession:
GCF_001514125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMWS01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
108.5x
Sequencing technology:
Illumina MiSeq

IDs: 618611 [UID] 2788468 [GenBank] 3398198 [RefSeq]

See Genome Information for Streptomyces longwoodensis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 16:34:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,275
CDS::6,937
Pseudo Genes::267
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::66
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,363,623
Total ungapped length8,345,388
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50452,173
Scaffold L506
Number of contigs74
Contig N50271,394
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,363,623328,345,388452,173420

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces longwoodensisStreptomyces longwoodensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650535.1Streptomyces galbustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.4778.5584.71

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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