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ASM151405v1

Organism name:
Streptomyces corchorusii (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:40340
Infraspecific name:
Strain: DSM 40340
BioSample:
SAMN04193345
BioProject:
PRJNA299223
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001514055.1 (latest)
RefSeq assembly accession:
GCF_001514055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMWP01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
119.0x
Sequencing technology:
Illumina MiSeq

IDs: 618581 [UID] 2788398 [GenBank] 2792818 [RefSeq]

See Genome Information for Streptomyces corchorusii

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 19:13:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::9,025
CDS::8,660
Pseudo Genes::288
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::72
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,309,547
Total ungapped length10,285,585
Gaps between scaffolds0
Number of scaffolds71
Scaffold N50535,873
Scaffold L508
Number of contigs116
Contig N50211,102
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,309,5477110,285,585535,873450

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces corchorusiiStreptomyces corchorusii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650115.1Streptomyces olivaceoviridistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.9878.2782.46

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected