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ASM151403v1

Organism name:
Streptomyces yokosukanensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:40224
Infraspecific name:
Strain: DSM 40224
BioSample:
SAMN04193343
BioProject:
PRJNA299221
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001514035.1 (latest)
RefSeq assembly accession:
GCF_001514035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMWN01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
67.6x
Sequencing technology:
Illumina MiSeq

IDs: 618591 [UID] 2788408 [GenBank] 3397558 [RefSeq]

See Genome Information for Streptomyces yokosukanensis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 16:59:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,859
CDS::8,391
Pseudo Genes::395
CRISPR Arrays::2
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::68
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,159,272
Total ungapped length10,107,921
Gaps between scaffolds0
Number of scaffolds98
Scaffold N50463,572
Scaffold L509
Number of contigs188
Contig N50258,279
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)188

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,159,2729810,107,921463,572900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces yokosukanensisStreptomyces yokosukanensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650595.1Streptomyces alanosinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2761.5960.76

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected