U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM151395v1

Organism name:
Streptomyces pseudovenezuelae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 40212
BioSample:
SAMN04193342
BioProject:
PRJNA299220
Submitter:
Bielefeld University
Date:
2016/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001513955.1 (latest)
RefSeq assembly accession:
GCF_001513955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMWM01
Assembly method:
Newbler v. 2.8
Expected final version:
yes
Genome coverage:
62.7x
Sequencing technology:
Illumina MiSeq

IDs: 618541 [UID] 2788318 [GenBank] 3138618 [RefSeq]

See Genome Information for Streptomyces pseudovenezuelae

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2015 16:49:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::8,461
CDS::8,204
Pseudo Genes::185
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::67
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,639,743
Total ungapped length9,613,440
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50908,089
Scaffold L505
Number of contigs87
Contig N50436,750
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)87

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,639,743329,613,440908,089550

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces pseudovenezuelaeStreptomyces pseudovenezuelae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001514145.1Streptomyces canustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.5374.2461.84

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
Support Center