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ASM148512v1

Organism name:
Streptomyces scabiei (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: S58
BioSample:
SAMD00034890
BioProject:
PRJDB4008
Submitter:
Plant Pathology and Entomology, Kagoshima Institute for Agricultural Development
Date:
2015/12/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001485125.1 (latest)
RefSeq assembly accession:
GCF_001485125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BCMM01
Assembly method:
SPAdes v. 3.5.0
Genome coverage:
249x
Sequencing technology:
MiSeq

IDs: 604041 [UID] 2754798 [GenBank] 2779348 [RefSeq]

See Genome Information for Streptomyces scabiei

There are 14 assemblies for this organism

See more

History (Show revision history)

Comment

Please visit our web page
URL:http://www.pref.kagoshima.jp/ag11/

Global statistics

Total sequence length10,001,327
Total ungapped length10,001,041
Gaps between scaffolds0
Number of scaffolds147
Scaffold N50193,185
Scaffold L5020
Number of contigs149
Contig N50193,185
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)147

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,001,32714710,001,041193,18520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces scabieiStreptomyces scabiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014873495.1Streptomyces stelliscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3775.1571.59

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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