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ASM148470v1

  • Anomalous assembly.
Organism name:
Streptomyces sp. 4F (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 4F
BioSample:
SAMN04245816
BioProject:
PRJNA301391
Submitter:
Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, CAS
Date:
2016/01/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_001484705.1 (latest)
RefSeq assembly accession:
GCF_001484705.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
phred/phrep/consed v. 15.0
Genome coverage:
20.8
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 603841 [UID] 2754318 [GenBank] 2769698 [RefSeq]

See Genome Information for Streptomyces sp. 4F

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
DNA or Bacteria available from Zhongjun Qin's lab in Shanghai Institute of Plant Physiology and Ecology, China

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/09/2015 15:52:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::7,087
CDS::6,792
Pseudo Genes::208
CRISPR Arrays::4
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
partial rRNAs::
tRNAs::68
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,047,771
Total ungapped length8,047,771
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001484715.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP013142.1=NZ_CP013142.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,047,771

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. 4FStreptomyces sp. 4F

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649935.1Streptomyces variabilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.3575.9383.09

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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