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ASM146812v1

Organism name:
Legionella rubrilucens (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WA-270A-C2
BioSample:
SAMN04274791
BioProject:
PRJNA285910
Submitter:
Tel Aviv University
Date:
2015/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001468125.1 (latest)
RefSeq assembly accession:
GCF_001468125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LNYT01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
1211x
Sequencing technology:
Illumina

IDs: 595591 [UID] 2724598 [GenBank] 2726818 [RefSeq]

See Genome Information for Legionella rubrilucens

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated using prokka 1.11

Global statistics

Total sequence length3,129,674
Total ungapped length3,128,807
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50859,478
Scaffold L502
Number of contigs43
Contig N50267,771
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,129,674223,128,807859,478210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella rubrilucensLegionella rubrilucens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900640015.1Legionella rubrilucenstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900640015.1Legionella rubrilucenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9298.11
Best-match type99.9999.9298.11

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna