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ASM146800v1

Organism name:
Legionella steelei (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IMVS3376
BioSample:
SAMN04274796
BioProject:
PRJNA285910
Submitter:
Tel Aviv University
Date:
2015/12/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001468005.1 (latest)
RefSeq assembly accession:
GCF_001468005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LNYY01
Assembly method:
Velvet v. 1.2.10
Expected final version:
yes
Genome coverage:
474x
Sequencing technology:
Illumina

IDs: 595531 [UID] 2724478 [GenBank] 2739708 [RefSeq]

See Genome Information for Legionella steelei

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated using prokka 1.11

Global statistics

Total sequence length4,227,172
Total ungapped length4,227,062
Gaps between scaffolds0
Number of scaffolds21
Scaffold N502,403,021
Scaffold L501
Number of contigs32
Contig N50496,665
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)21

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,227,172214,227,0622,403,021110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella steeleiLegionella steelei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001468065.1Legionella steigerwaltiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.0756.3760.34

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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