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Root431

Organism name:
Streptomyces sp. Root431 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Root431
BioSample:
SAMN04155804
BioProject:
PRJNA297942
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001426585.1 (latest)
RefSeq assembly accession:
GCF_001426585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMEI01
Assembly method:
A5 v. 20140605
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 574741 [UID] 2566568 [GenBank] 2577748 [RefSeq]

See Genome Information for Streptomyces sp. Root431

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 10:43:55
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,821
CDS::5,589
Pseudo Genes::159
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::66
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,497,041
Total ungapped length6,496,931
Gaps between scaffolds0
Number of scaffolds13
Scaffold N50799,865
Scaffold L504
Number of contigs17
Contig N50700,378
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)13

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,497,041136,496,931799,86540

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Root431Streptomyces sp. Root431

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006539185.1Streptomyces gardneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.6185.4361.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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