U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

Root1304

Organism name:
Streptomyces sp. Root1304 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Root1304
BioSample:
SAMN04155719
BioProject:
PRJNA297942
Submitter:
Max Planck Institute for Plant Breeding Research
Date:
2015/11/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001426405.1 (latest)
RefSeq assembly accession:
GCF_001426405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LMEP01
Assembly method:
A5 v. 20140604
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina HiSeq

IDs: 574651 [UID] 2566388 [GenBank] 2576988 [RefSeq]

See Genome Information for Streptomyces sp. Root1304

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/29/2015 12:17:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::6,725
CDS::6,455
Pseudo Genes::196
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::4 (5S)
tRNAs::66
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,584,031
Total ungapped length7,583,913
Gaps between scaffolds0
Number of scaffolds28
Scaffold N50557,836
Scaffold L505
Number of contigs31
Contig N50557,836
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,584,031287,583,913557,83630

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Root1304Streptomyces sp. Root1304

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021432215.1Streptomyces venezuelaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.3967.2262.46

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
Support Center