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ASM141976v1

Organism name:
Streptomyces torulosus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL B-3889
BioSample:
SAMN04004093
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2015/10/29
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001419765.1 (latest)
RefSeq assembly accession:
GCF_001419765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIRK01
Assembly method:
CLCBio Genomics Workbench v. 8.0.1
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina MiSeq

IDs: 563351 [UID] 2538278 [GenBank] 2559908 [RefSeq]

See Genome Information for Streptomyces torulosus

History (Show revision history)

Comment

Global statistics

Total sequence length9,848,803
Total ungapped length9,845,972
Gaps between scaffolds0
Number of scaffolds1,055
Scaffold N5015,874
Scaffold L50185
Number of contigs1,127
Contig N5015,769
Contig L50186
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,055

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,848,8031,0559,845,97215,874720

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces torulosusStreptomyces torulosus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001418475.1Streptomyces ossamyceticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.0672.5276.82

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected
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