U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM141857v1

Organism name:
Peterkaempfera griseoplana (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: NRRL:B-3064
Infraspecific name:
Strain: NRRL B-3064
BioSample:
SAMN04003996
BioProject:
PRJNA293375
Submitter:
USDA/ARS/NCAUR
Date:
2015/10/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001418575.1 (latest)
RefSeq assembly accession:
GCF_001418575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LIQR01
Assembly method:
CLCbio Genomics Workbench v. 8.0.1
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina MiSeq

IDs: 562561 [UID] 2536368 [GenBank] 2546668 [RefSeq]

See Genome Information for Peterkaempfera griseoplana

History (Show revision history)

Comment

Global statistics

Total sequence length8,245,423
Total ungapped length8,243,323
Gaps between scaffolds0
Number of scaffolds802
Scaffold N5017,726
Scaffold L50143
Number of contigs850
Contig N5017,457
Contig L50144
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)802

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,245,4238028,243,32317,726480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Peterkaempfera griseoplanaPeterkaempfera griseoplana

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003258605.2Peterkaempfera bronchialistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.8637.8844.04

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected