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ASM141773v1

Organism name:
Streptomyces sp. NBRC 110028 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NBRC 110028
BioSample:
SAMD00026622
BioProject:
PRJDB3539
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2015/10/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001417735.1 (latest)
RefSeq assembly accession:
GCF_001417735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBUZ01
Assembly method:
newbler v. 2.6
Genome coverage:
86x
Sequencing technology:
454 GS-FLX Titanium; Illumina HiSeq 1000

IDs: 562151 [UID] 2535498 [GenBank] 2544298 [RefSeq]

See Genome Information for Streptomyces sp. NBRC 110028

History (Show revision history)

Comment



The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)
Strain ... NBRC 110028 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).  more

Global statistics

Total sequence length8,921,218
Total ungapped length8,914,997
Gaps between scaffolds0
Number of scaffolds96
Scaffold N50345,609
Scaffold L507
Number of contigs110
Contig N50263,196
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)96

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,921,218968,914,997345,609140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NBRC 110028Streptomyces sp. NBRC 110028

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003721215.1Streptomyces botrytidirepellenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.7873.2859.34

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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