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Source database (GenBank or RefSeq) File type

Walnut 2.0

Organism name:

Juglans regia (English walnut)

Infraspecific name:

Cultivar: Chandler

BioSample:

SAMN03704235

BioProject:

PRJNA291087

Submitter:

Johns Hopkins University

Date:

2020/07/08

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001411555.2 (latest)

RefSeq assembly accession:

GCF_001411555.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 9 unlocalized scaffolds on chromosomes MT and Pltd (in non-nuclear assembly-unit)
Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)

Data displayed for RefSeq version

WGS Project:

LIHL02

Assembly method:

MaSuRCA v. 3.2.1; HiRise v. 2018-04

Expected final version:

Genome coverage:

155.0x

Sequencing technology:

Illumina HiSeq; Oxford Nanopore MinION; Illumina NovaSeq

IDs: 7332581 [UID] 20288078 [GenBank] 20845688 [RefSeq]

See Genome Information for Juglans regia

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001411555.2	≠	GCF_001411555.2	Walnut 2.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_001411555.1	≠	GCF_001411555.1	wgs.5d	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	572,946,670
Total ungapped length	572,342,801
Gaps between scaffolds	0
Number of scaffolds	24,757
Scaffold N50	37,114,715
Scaffold L50	7
Number of contigs	25,808
Contig N50	1,072,962
Contig L50	146
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	24,757

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023841.1	=	NC_049901.1	0
Chromosome 2	CM023842.1	=	NC_049902.1	0
Chromosome 3	CM023843.1	=	NC_049903.1	0
Chromosome 4	CM023844.1	=	NC_049904.1	0
Chromosome 5	CM023845.1	=	NC_049905.1	0
Chromosome 6	CM023846.1	=	NC_049906.1	0
Chromosome 7	CM023847.1	=	NC_049907.1	0
Chromosome 8	CM023848.1	=	NC_049908.1	0
Chromosome 9	CM023849.1	=	NC_049909.1	0
Chromosome 10	CM023850.1	=	NC_049910.1	0
Chromosome 11	CM023851.1	=	NC_049911.1	0
Chromosome 12	CM023852.1	=	NC_049912.1	0
Chromosome 13	CM023853.1	=	NC_049913.1	0
Chromosome 14	CM023854.1	=	NC_049914.1	0
Chromosome 15	CM023855.1	=	NC_049915.1	0
Chromosome 16	CM023856.1	=	NC_049916.1	0
unplaced	n/a	n/a	n/a	24,740

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	572,786,133	24,756	572,182,264	37,114,715	1,051
Chromosome 1	45,207,397	1	45,193,197	45,207,397	74
Chromosome 2	37,821,870	1	37,813,329	37,821,870	63
Chromosome 3	35,064,427	1	35,049,872	35,064,427	68
Chromosome 4	34,823,025	1	34,714,513	34,823,025	68
Chromosome 5	22,562,875	1	22,556,952	22,562,875	46
Chromosome 6	39,020,271	1	38,992,049	39,020,271	96
Chromosome 7	52,418,484	1	52,205,569	52,418,484	99
Chromosome 8	30,564,197	1	30,550,778	30,564,197	72
Chromosome 9	24,263,475	1	24,256,786	24,263,475	45
Chromosome 10	37,707,155	1	37,689,475	37,707,155	97
Chromosome 11	37,114,715	1	37,007,675	37,114,715	55
Chromosome 12	31,492,331	1	31,482,626	31,492,331	50
Chromosome 13	39,757,759	1	39,745,375	39,757,759	70
Chromosome 14	28,841,373	1	28,828,190	28,841,373	46
Chromosome 15	20,407,330	1	20,404,390	20,407,330	31
Chromosome 16	28,711,772	1	28,706,032	28,711,772	51
unplaced	27,007,677	24,740	26,985,456	13,377	20

Assembly

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Walnut 2.0

See Genome Information for Juglans regia

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear