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wgs.5d

Organism name:
Juglans regia (English walnut)
Infraspecific name:
Cultivar: Chandler
BioSample:
SAMN03704235
BioProject:
PRJNA291087
Submitter:
Johns Hopkins University
Date:
2015/10/22
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001411555.1 (latest)
RefSeq assembly accession:
GCF_001411555.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 8 unlocalized scaffolds on chromosomes MT and Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
LIHL01
Assembly method:
MaSuRCA v. 2.3
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina HiSeq

IDs: 559011 [UID] 2510648 [GenBank] 3643828 [RefSeq]

See Genome Information for Juglans regia

There are 3 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length699,672,627
Total ungapped length674,803,561
Gaps between scaffolds0
Number of scaffolds105,803
Scaffold N50250,522
Scaffold L50443
Number of contigs139,898
Contig N5038,661
Contig L504,059
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)105,803

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced699,672,627105,803674,803,561250,52234,0950
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