Format

Download Assembly

Send to:

Choose Destination

PbbICMP4116

Organism name:
Pseudomonas syringae pv. berberidis (g-proteobacteria)
Infraspecific name:
Strain: ICMP4116
BioSample:
SAMN03976296
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from pathotype material
GenBank assembly accession:
GCA_001401405.1 (latest)
RefSeq assembly accession:
GCF_001401405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJPU01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
167.1131643x
Sequencing technology:
Illumina MiSeq

IDs: 553831 [UID] 2499938 [GenBank] 2632078 [RefSeq]

See Genome Information for Pseudomonas syringae group genomosp. 3

There are 74 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length6,263,211
Total ungapped length6,261,885
Gaps between scaffolds0
Number of scaffolds341
Scaffold N5055,970
Scaffold L5035
Number of contigs392
Contig N5049,176
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)341

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,263,2113416,261,88555,970510
Support Center