Format

Download Assembly

Send to:

Choose Destination

PttICMP459

Organism name:
Pseudomonas syringae pv. aptata (g-proteobacteria)
Infraspecific name:
Strain: ICMP459
BioSample:
SAMN03976295
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001401335.1 (latest)
RefSeq assembly accession:
GCF_001401335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJRP01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
39.99374217x
Sequencing technology:
Illumina MiSeq

IDs: 553571 [UID] 2499308 [GenBank] 2633178 [RefSeq]

See Genome Information for Pseudomonas syringae

There are 431 assemblies for this organism

See more

History (Show revision history)

Global statistics

Total sequence length5,977,364
Total ungapped length5,974,199
Gaps between scaffolds0
Number of scaffolds149
Scaffold N50129,424
Scaffold L5017
Number of contigs226
Contig N5078,463
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)149

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,977,3641495,974,199129,424770
Support Center