U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



PceICMP17524

Organism name:
Pseudomonas syringae pv. cerasicola (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ICMP 17524
BioSample:
SAMN03976260
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001400215.1 (latest)
RefSeq assembly accession:
GCF_001400215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJQA01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
17.449595x
Sequencing technology:
Illumina MiSeq

IDs: 553011 [UID] 2498128 [GenBank] 2633838 [RefSeq]

See Genome Information for Pseudomonas syringae

Pathogen Detection Resources

There are 832 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,526,054
Total ungapped length5,525,535
Gaps between scaffolds0
Number of scaffolds970
Scaffold N5011,745
Scaffold L50147
Number of contigs987
Contig N5011,661
Contig L50148
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)970

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,526,0549705,525,53511,745170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas syringae pv. cerasicolaPseudomonas syringae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000507185.2Pseudomonas syringae KCTC 12500suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000935675.1Pseudomonas meliaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.4480.5372.34
Best-match type98.8584.6490.93

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is suspected of being inaccurate