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PamICMP3918

Organism name:
Pseudomonas amygdali (g-proteobacteria)
Infraspecific name:
Strain: ICMP3918
BioSample:
SAMN03976261
BioProject:
PRJNA292453
Submitter:
University of Toronto
Date:
2015/10/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • untrustworthy as type
GenBank assembly accession:
GCA_001400115.1 (latest)
RefSeq assembly accession:
GCF_001400115.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LJPQ01
Assembly method:
CLC assembly cell v. 4.2
Genome coverage:
50.99035967x
Sequencing technology:
Illumina MiSeq

IDs: 552941 [UID] 2497948 [GenBank] 2631698 [RefSeq]

See Genome Information for Pseudomonas amygdali

There are 95 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length5,934,781
Total ungapped length5,934,526
Gaps between scaffolds0
Number of scaffolds222
Scaffold N5054,621
Scaffold L5036
Number of contigs237
Contig N5053,352
Contig L5037
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)222

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,934,7812225,934,52654,621150
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