U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM131626v1

Organism name:
Vulcanisaeta sp. JCM 16159 (crenarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 16159
BioSample:
SAMD00000531
BioProject:
PRJDB850
Submitter:
The University of Tokyo
Date:
2015/10/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001316265.1 (latest)
RefSeq assembly accession:
GCF_001316265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBDN01
Assembly method:
Newbler v. 2.8
Genome coverage:
51x
Sequencing technology:
Ion PGM

IDs: 503521 [UID] 2395888 [GenBank] 2397258 [RefSeq]

See Genome Information for Vulcanisaeta sp. JCM 16159

History (Show revision history)

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

  more

Global statistics

Total sequence length2,249,042
Total ungapped length2,249,042
Number of contigs28
Contig N50181,468
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,249,042282,249,042181,46800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vulcanisaeta sp. JCM 16159Vulcanisaeta sp. JCM 16159

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000148385.1Vulcanisaeta distributasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.2069.7366.06

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna