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ASM131624v1

Organism name:
Vulcanisaeta sp. JCM 14467 (crenarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 14467
BioSample:
SAMD00000523
BioProject:
PRJDB849
Submitter:
The University of Tokyo
Date:
2015/10/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001316245.1 (latest)
RefSeq assembly accession:
GCF_001316245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BBDM01
Assembly method:
Newbler v. 2.8
Genome coverage:
48x
Sequencing technology:
Ion PGM

IDs: 503511 [UID] 2395868 [GenBank] 2397158 [RefSeq]

See Genome Information for Vulcanisaeta sp. JCM 14467

History (Show revision history)

Comment

This work had been advanced in the National BioResource Project(NBRP) supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan(MEXT) as NBRP Genome Information Upgrading Program.
Source DNA and bacteria available from Microbe Division/JCM, RIKEN BioResource Center.
http://www.jcm.riken.go.jp/
Genome ... sequencing done by Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo. http://www.cb.k.u-tokyo.ac.jp/hattorilab/

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Global statistics

Total sequence length2,443,876
Total ungapped length2,443,876
Number of contigs25
Contig N50126,836
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,443,876252,443,876126,83600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vulcanisaeta sp. JCM 14467Vulcanisaeta sp. JCM 14467

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000148385.1Vulcanisaeta distributasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.1649.1850.62

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna